PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013934001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 608aa    MW: 67333.3 Da    PI: 7.1633
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013934001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-16180230255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrd    + +  r+ lg+f ta eAa+a+++a+ k++g
  GSVIVT01013934001 180 HYRGVRRRP-WGKFAAEIRDS---NrRGSRVCLGTFETAIEAARAYDRAAFKMRG 230
                        7********.**********4...3234*************************98 PP

2AP226.22.1e-082612863055
                AP2  30 rfslgkfgtaeeAakaaiaarkkleg 55 
                        +++lg+f ta eAa+a+++a+ k++g
  GSVIVT01013934001 261 KVWLGTFETAIEAARAYDRAAFKMRG 286
                        79**********************98 PP

3AP260.53.8e-19448498255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAa+a+++a+ k++g
  GSVIVT01013934001 448 HYRGVRRRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFKMRG 498
                        7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29179239IPR001471AP2/ERF domain
SMARTSM003804.4E-33180244IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-21180239IPR016177DNA-binding domain
PROSITE profilePS5103221.983180238IPR001471AP2/ERF domain
PfamPF008472.6E-12180230IPR001471AP2/ERF domain
CDDcd000185.96E-26180238No hitNo description
PRINTSPR003675.5E-13181192IPR001471AP2/ERF domain
PROSITE profilePS5103214.658227294IPR001471AP2/ERF domain
SMARTSM003805.2E-11253300IPR001471AP2/ERF domain
PfamPF008472.7E-5257286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-16260295IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-10260295IPR016177DNA-binding domain
PRINTSPR003675.5E-13276296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32447507IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22448507IPR016177DNA-binding domain
SMARTSM003806.6E-37448512IPR001471AP2/ERF domain
PROSITE profilePS5103224.658448506IPR001471AP2/ERF domain
PfamPF008475.6E-14448498IPR001471AP2/ERF domain
CDDcd000181.55E-23456506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MNNFPIDIHV GINVLETTRL CLMEPPQVKH IQTNPTHSFV STIIELKILP SDPETSTETS  60
SFHICFSTTQ HSLQQLISDF ECVETFVSDV GEASQASTSE SSVSTSHIVQ VSDYLKPNEH  120
ENDSFFLHRS TSAPSGAFQF ETKSQKTSTL SQRRPPLSIS VPPPPTSQPS SAPVAGEIRH  180
YRGVRRRPWG KFAAEIRDSN RRGSRVCLGT FETAIEAARA YDRAAFKMRG SKAILNFPLE  240
AGNWSGSDPP ATSGREIVRP KVWLGTFETA IEAARAYDRA AFKMRGSKAV LNFPLEAGNW  300
SDSDPPATSI RKRERESEKE VEFPKSDSTA AAASVLGISP LTPSSWRAVW EEREMKGTIP  360
HCSSPIMGEE ASSLQLIHQL LLSDFDSMET FVSHASHSLR SSASDSSFQT ESPKPSRLSH  420
RRPPLSISLP PPPISHTSSS LDSGERRHYR GVRRRPWGKF AAEIRDPNRR GSRVWLGTFE  480
TAIEAARAYD RAAFKMRGSK AVLNFPLEAG NWSDSDPPAT SIRKRERESE SEEREQPEIK  540
VLKQEEAPPA SDSPVVAEAA NVLEASPLTP SSWRTVWEER DMEGAFHLPP LTPLSPHPWI  600
GYSRLIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27179507161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-27179507464ATERF1
3gcc_A2e-27179507464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.244890.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4635300.0AM463530.2 Vitis vinifera contig VV78X018242.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634026.21e-144PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLD3Y3F11e-136D3Y3F1_VITPS; ERF1 transcription factor
STRINGVIT_16s0013g01110.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.17e-25ERF family protein